MmuALTD0002051-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000047617 | BC029214
Description
cDNA sequence BC029214 [Source:MGI Symbol;Acc:MGI:2442831]
Coordinates
chr2:25460445-25460664:-
Coord C1 exon
chr2:25460655-25460664
Coord A exon
NA
Coord C2 exon
chr2:25460445-25460494
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
CAATTCCTTGTTCCCAGCAGAAA
3' ss Score
5.18
Exon sequences
Seq C1 exon
GGCGAGGCTC
Seq A exon
NA
Seq C2 exon
AAAGCCCGATTTGGCCTAAGTGGGGCTGAAGATATCCATTCCCGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047617-1-4,3-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(10.2=100)
A:
NA
C2:
PF153841=DUF4610=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types