HsaEX0011631 @ hg38
Exon Skipping
Gene
ENSG00000148362 | C9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
Coordinates
chr9:136992604-136993243:+
Coord C1 exon
chr9:136992604-136992704
Coord A exon
chr9:136992925-136992968
Coord C2 exon
chr9:136993053-136993243
Length
44 bp
Sequences
Splice sites
3' ss Seq
CAAGCCCCTGTGCTCTCTAGAAA
3' ss Score
5.42
5' ss Seq
CCGGTTCAG
5' ss Score
-2.24
Exon sequences
Seq C1 exon
CGCGGGCGGCCCCGCCTGACAGGCCTTCTCCCCCAGCGTGACCGACGCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTCGTGG
Seq A exon
AAAGCCCGTTTTGGCCTGAGTGCGGCTGAGGACATCACCCCCCG
Seq C2 exon
GGCAGCCTGTGAGCAGCAAGCTGTGGCTCTGACTCTGCAGGAGGACAGAGCATCCCTGACGCTTTCAGGGGGGCCCTCGGCACTGGCCTTTGACCTCTCCAAGGTACCAGGCCCAGAGGCAGCCCCCAGGCTGCGGGCGCTGACACTGGGCCTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148362-'2-3,'2-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
NA
A:
PF153841=DUF4610=FE(8.1=100)
C2:
PF153841=DUF4610=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGCCTTCTCCCCCAG
R:
CTGTCCTCCTGCAGAGTCAGA
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development