HsaEX0011631 @ hg19
Exon Skipping
Gene
ENSG00000148362 | C9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:27849]
Coordinates
chr9:139887092-139887695:+
Coord C1 exon
chr9:139887092-139887152
Coord A exon
chr9:139887377-139887426
Coord C2 exon
chr9:139887505-139887695
Length
50 bp
Sequences
Splice sites
3' ss Seq
CAAGCCCCTGTGCTCTCTAGAAA
3' ss Score
5.42
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGTGACCGACGCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTC
Seq A exon
AAAGCCCGTTTTGGCCTGAGTGCGGCTGAGGACATCACCCCCCGGTTCAG
Seq C2 exon
GGCAGCCTGTGAGCAGCAAGCTGTGGCTCTGACTCTGCAGGAGGACAGAGCATCCCTGACGCTTTCAGGGGGGCCCTCGGCACTGGCCTTTGACCTCTCCAAGGTACCAGGCCCAGAGGCAGCCCCCAGGCTGCGGGCGCTGACACTGGGCCTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148362-'1-4,'1-3,2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(10.1=100)
A:
PF153841=DUF4610=FE(8.1=100)
C2:
PF153841=DUF4610=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCACGCCGGACAG
R:
TTGGAGAGGTCAAAGGCCAGT
Band lengths:
133-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)