DreEX0001627 @ danRer10
Exon Skipping
Gene
ENSDARG00000078807 | C5H9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
Coordinates
chr5:24581159-24581699:+
Coord C1 exon
chr5:24581159-24581219
Coord A exon
chr5:24581390-24581439
Coord C2 exon
chr5:24581521-24581699
Length
50 bp
Sequences
Splice sites
3' ss Seq
AATTGCTTATTTTTCCACAGTTT
3' ss Score
8.47
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
ATTTACCAATGGTGAAGATGTTTGGAAAACACATCTTTCAGAGGAGATTCTCTCTCAGCTT
Seq A exon
TTTAAGAAATTTTCATTAAAGTCCACAGAGGATTACACCTTCAAAATCAA
Seq C2 exon
ATGTGCATGCAAGACTGGCAGAGCGTTTGTGAAGCTGCTGGAGGACAGTGCTGTGCTGCATTTAGGAGCTGAAGCCACAGATCTCAGCCTGTCTCTAGCAAAACTCACAGACTCTGAGGGAAGGATGGAAGTCAAGGACCTGCTCTTTAAAATGGCAGATAGCTTGCAACAACTAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078807-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(10.7=100)
A:
PF153841=DUF4610=FE(8.6=100)
C2:
PF153841=DUF4610=FE(33.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGGTGAAGATGTTTGGA
R:
AGATCTGTGGCTTCAGCTCCT
Band lengths:
141-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]