RnoALTD0021621-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011310 | Pde10a
Description
phosphodiesterase 10A [Source:RGD Symbol;Acc:68434]
Coordinates
chr1:52444577-52495582:-
Coord C1 exon
chr1:52495373-52495582
Coord A exon
NA
Coord C2 exon
chr1:52444577-52444705
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
TCTCTCCGGTTCTCTTGCAGGTT
3' ss Score
12.82
Exon sequences
Seq C1 exon
ACCCCACTGGTGCTGTGTTGCCTTTCAGTCCAGGAAGAAAGAAAGAAAGGATTCTGAGGATTTGGGCAAAGCCACATTCCTGGGGACGTCTGTATACTGATGCCAAACCCAAGAGCTGAGCTGCTGATGAGGCCCAGGGGGCAGCCCACGCGCCCTGAGCTGTTGGCTAGCAAGGCCTCCCTGCTCCATGTGGCATGGAAAAACTATTTG
Seq A exon
NA
Seq C2 exon
GTTTGACGGATGAAAAGGTGAAGGCCTATCTTTCCCTCCATCCCCAGGTATTAGACGAGTTTGTTTCTGAAAGTGTTAGTGCGGAGACCGTGGAGAAGTGGCTGAAGAGGAAAAACAACAAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011310-12-5,13-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF106984=DUF2505=PU(56.8=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAAACCCAAGAGCTGAG
R:
GGCCTTCACCTTTTCATCCGT
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]