RnoEX0064200 @ rn6
Exon Skipping
Gene
ENSRNOG00000011310 | Pde10a
Description
phosphodiesterase 10A [Source:RGD Symbol;Acc:68434]
Coordinates
chr1:52444577-52590207:-
Coord C1 exon
chr1:52589922-52590207
Coord A exon
chr1:52574621-52574713
Coord C2 exon
chr1:52444577-52444705
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATGGATTTTTATTTCAATAGGTT
3' ss Score
7.47
5' ss Seq
TGGGTTTGT
5' ss Score
0.77
Exon sequences
Seq C1 exon
TGTCAAAGAGGCCCCAAGAAGAAGGTGACAAGAGTCCTAACCAAACTATACACACCCTGTAAGATAGGAGACTCCCAGAGAGATCTTACTCAGACAGGATGCTGTGTTTAGCCATACTTGGCATTAATGCCATGACCTTAATCTTTTCCAGCAGGCTGCCTCCCGATCACATTTAAAGGTGGGAGCAAAGGCCCCGCTCTGCTGGCACTTCGAAACCGCACAGACTCTCGGGGGCAGATGAGCAATGACTCCCCAGAAGGTGCCGTGGGCTCCTGCAACGCAACAG
Seq A exon
GTTCCACCGGTTCCACTGGGGAACTTGGCAAGGAGTTCCATACGCCGCCACGCAGGAAGTCAGCAAGTGACTCACGCCTCGCATTATGCATGG
Seq C2 exon
GTTTGACGGATGAAAAGGTGAAGGCCTATCTTTCCCTCCATCCCCAGGTATTAGACGAGTTTGTTTCTGAAAGTGTTAGTGCGGAGACCGTGGAGAAGTGGCTGAAGAGGAAAAACAACAAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011310_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.136
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF106984=DUF2505=PU(56.8=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCGAAACCGCACAGACTC
R:
CGGTCTCCGCACTAACACTTT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]