RnoALTD0022604-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023760 | Plekhm3
Description
pleckstrin homology domain containing M3 [Source:RGD Symbol;Acc:1307151]
Coordinates
chr9:71631162-71651513:-
Coord C1 exon
chr9:71651413-71651513
Coord A exon
chr9:71651333-71651412
Coord C2 exon
chr9:71631162-71631985
Length
80 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TCTTGTTTGTTTTCTCCCAGGAA
3' ss Score
10.12
Exon sequences
Seq C1 exon
CCGGGCTGCCGCGGGGAAGCATTTGGGCGTGGGACCGCGAGAAGCCGCTTGTAAACAGAACCGGGCCGGGATGGTTGGCGGCCGGAGCGCAGCCGCTGGCG
Seq A exon
GTGAGGAGGGCGGGCTGCCTGGGTCGGGGTCCTGCTGGGGGTTGACTGCAGGCCGCACGGGCGACAGGACCAAAGCCGCG
Seq C2 exon
GAAGTTGAAGATTGGCGTTACATTGCTTTGGCAAACAGTGCCCTGCTGTCTTCACCGAGATCTCTAACAAGCCCCTGTGCTTCTCCAGGCAGCCAGATGAAGATTGCTTCCTCTCGTCTCCACAGCTGCGCTGCCGAATCACCTCTCTCTGTCGGCTGAGTGCTCATGACGCCTTTTCCTTGAAGCAGTTTAGAAGCGTGGACCCTGTGTCATGGAAGCTTTGGAGGTAGATGACATCAGCCCCGCCTTAGAGGTCACTGAGGACTTCTTCAGTACTTTTGACAGTAAGCTGGGAAAGGCTGTACAGCAGGCAGAGGTCTATGGGGTCCAGGAAGTCCCTGAACTGGTGGGGCACGAGGTACTTGGTAACATAACAGACAATGGTGCTTTGCGAAGCGTCGCTTCCCTGGGCAAGGGGACAATGATTTGGGACCACTGTAAGAGCAGGCTCCTAGAAACCAAAGCTCAAAATGTCTTCCCTGCCAAAGAACAGCTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023760-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.278
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGCTTGTAAACAGAACCG
R:
AGCAATCTTCATCTGGCTGCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]