RnoEX0067130 @ rn6
Exon Skipping
Gene
ENSRNOG00000023760 | Plekhm3
Description
pleckstrin homology domain containing M3 [Source:RGD Symbol;Acc:1307151]
Coordinates
chr9:71631162-71651512:-
Coord C1 exon
chr9:71651333-71651512
Coord A exon
chr9:71646541-71646599
Coord C2 exon
chr9:71631162-71631985
Length
59 bp
Sequences
Splice sites
3' ss Seq
CACCCTGTCTGTCTCCACAGTGG
3' ss Score
11.01
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CGGGCTGCCGCGGGGAAGCATTTGGGCGTGGGACCGCGAGAAGCCGCTTGTAAACAGAACCGGGCCGGGATGGTTGGCGGCCGGAGCGCAGCCGCTGGCGGTGAGGAGGGCGGGCTGCCTGGGTCGGGGTCCTGCTGGGGGTTGACTGCAGGCCGCACGGGCGACAGGACCAAAGCCGCG
Seq A exon
TGGCTCCTGGCCGTTTGCTGGCTTGTGTCATAGCAGATGTTCACCCCTTGGAAGAAAAG
Seq C2 exon
GAAGTTGAAGATTGGCGTTACATTGCTTTGGCAAACAGTGCCCTGCTGTCTTCACCGAGATCTCTAACAAGCCCCTGTGCTTCTCCAGGCAGCCAGATGAAGATTGCTTCCTCTCGTCTCCACAGCTGCGCTGCCGAATCACCTCTCTCTGTCGGCTGAGTGCTCATGACGCCTTTTCCTTGAAGCAGTTTAGAAGCGTGGACCCTGTGTCATGGAAGCTTTGGAGGTAGATGACATCAGCCCCGCCTTAGAGGTCACTGAGGACTTCTTCAGTACTTTTGACAGTAAGCTGGGAAAGGCTGTACAGCAGGCAGAGGTCTATGGGGTCCAGGAAGTCCCTGAACTGGTGGGGCACGAGGTACTTGGTAACATAACAGACAATGGTGCTTTGCGAAGCGTCGCTTCCCTGGGCAAGGGGACAATGATTTGGGACCACTGTAAGAGCAGGCTCCTAGAAACCAAAGCTCAAAATGTCTTCCCTGCCAAAGAACAGCTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023760_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.278
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGGGGGTTGACTG
R:
AGCACAGGGGCTTGTTAGAGA
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]