RnoALTD0025081-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23607360-23607842:-
Coord C1 exon
chr12:23607692-23607842
Coord A exon
chr12:23607666-23607691
Coord C2 exon
chr12:23607360-23607424
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGG
5' ss Score
1.71
3' ss Seq
CACTGAACTTCTGCTTGCAGGTG
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGCCCAGGACAGCTGATTCCTGTCATTGAGGAGACAACCAGTGCTGAGTGTCGCCAGGAAGTGGCCACCACCCTGCTTAAGCTCTTCCTGGGGCAGGGGCTGGCCAAGGACCTTCTGGACCTGCTCTTTCAGCTGGAGCTGGGCCGCACCA
Seq A exon
GTGAGGCCTGAGAGGACTTGCCCCAG
Seq C2 exon
GTGAGGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAATCCTTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-16-17,17-17,18-17-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.5)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCTGCTTAAGCTCTTCC
R:
GAATTGCTCCGGAAGAGGGTG
Band lengths:
115-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]