RnoALTD0025095-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14410913-14411497:-
Coord C1 exon
chr7:14411427-14411497
Coord A exon
NA
Coord C2 exon
chr7:14410913-14411039
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTTCCCTTCACTGGCCCCAGACC
3' ss Score
8.04
Exon sequences
Seq C1 exon
AAGTTACTCAAGAGGCTGAAGGAGAAGAAAAGGGCCAAGTCGGAACTGGGAGCCCACACTCCTCGAGATGG
Seq A exon
NA
Seq C2 exon
ACCCTCCAGTGCTCTTGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGCGTTGAGAGGGATGTGAGAGTCTGGCCGCTGCATCCTAGCCTCCTGGGGGAGCCATATTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167-7-7,8-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(22.3=87.5)
A:
NA
C2:
PF0016924=PH=FE(44.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTACTCAAGAGGCTGAAGGAGA
R:
CTGGAAGCAATATGGCTCCCC
Band lengths:
197-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]