HsaALTD1009837-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:HGNC:26129]
Coordinates
chr19:15458529-15460258:-
Coord C1 exon
chr19:15460221-15460258
Coord A exon
chr19:15460203-15460220
Coord C2 exon
chr19:15458529-15458655
Length
18 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTCACCCACCCCCTTCCCAGACC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GGGTTGCTCAAGAGGCTGAAAGAGAAGAAAAAGGCCAG
Seq A exon
GTTGGAGCCCCGGGATGG
Seq C2 exon
ACCCCCCAGTGCTCTGGGCTCTAGGGAGTCGCTGGCCACACTCTCTGAACTGGACCTGGGTGCCGAGCGGGATGTGCGGATCTGGCCACTGCACCCCAGCCTCCTGGGGGAGCCCCACTGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-9-16,10-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.314
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(16.1=73.7)
A:
NA
C2:
PF0016924=PH=FE(48.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGCTCAAGAGGCTGAAA
R:
GGCACCCAGGTCCAGTTCAG
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains