RnoALTD0025515-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5462970-5463774:-
Coord C1 exon
chr20:5463672-5463774
Coord A exon
chr20:5463482-5463671
Coord C2 exon
chr20:5462970-5463221
Length
190 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
CTATGACCTCTGCCCTGCAGGAG
3' ss Score
8.16
Exon sequences
Seq C1 exon
CCATCTCTGTACTTTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGG
Seq A exon
GTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGACGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTTGATGCG
Seq C2 exon
GAGCTGTTTCTCAGTCTGATCCCCTCTCAGTGTTTGGGAGGCCTATGGGGTCACAGAGACCGGCCAGGACATTCTCATCTCTGCCCGTCTGTCCGAGCTACCGTCACGCAGTTCAACAAGGTGGCGGGGGCAGTAGTTAGCTCTGTCCTGGGGGCCACCCCAACTGGAGAGGGGCCAAGAGAGGTGACTGTGAGGCCACTCCGACCCCCACAGAGGGCCCGGCTCCTGGAGAAGTGGATCCGTGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474-11-11,12-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
NA
C2:
PF0061714=RasGEF=FE(37.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTTTCAACCTGGCTGGC
R:
ACAGAGCTAACTACTGCCCCC
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]