RnoINT0126471 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5462970-5463779:-
Coord C1 exon
chr20:5463482-5463779
Coord A exon
chr20:5463222-5463481
Coord C2 exon
chr20:5462970-5463221
Length
260 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
CTATGACCTCTGCCCTGCAGGAG
3' ss Score
8.16
Exon sequences
Seq C1 exon
GGTAGCCATCTCTGTACTTTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGACGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTTGATGCG
Seq A exon
GTGAGACCTTGACCTTTGACCCCACGTACTCTGACCCCCTCACTAACCTCTCCTTGGCTCCAGATCCTTTTCTTGCTTCCAATTCTGGTGCAGTCCCCTTTTCTGCTTCTCTGACCCTTCTCTTCCCTTTGCTCCTTGGCTGTTGTCCCCTTTGAACTCTGGCCCCACTGGTCCCCGGCCACTTAAGAGCCTCAGATCCCTGATACTGGAAACTTGCCTGGCTTGACTCTAAATTTTAACCTATGACCTCTGCCCTGCAG
Seq C2 exon
GAGCTGTTTCTCAGTCTGATCCCCTCTCAGTGTTTGGGAGGCCTATGGGGTCACAGAGACCGGCCAGGACATTCTCATCTCTGCCCGTCTGTCCGAGCTACCGTCACGCAGTTCAACAAGGTGGCGGGGGCAGTAGTTAGCTCTGTCCTGGGGGCCACCCCAACTGGAGAGGGGCCAAGAGAGGTGACTGTGAGGCCACTCCGACCCCCACAGAGGGCCCGGCTCCTGGAGAAGTGGATCCGTGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
NA
C2:
PF0061714=RasGEF=FE(37.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTTCGGACAGGGTATGC
R:
ACAGACGGGCAGAGATGAGAA
Band lengths:
297-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]