GgaINT0125399 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7453746-7454200:-
Coord C1 exon
chr17:7454079-7454200
Coord A exon
chr17:7453962-7454078
Coord C2 exon
chr17:7453746-7453961
Length
117 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CCCGTCCCTTTATCTTCTAGGAG
3' ss Score
12.54
Exon sequences
Seq C1 exon
CTGTGGACCACAGTGGCTGCACGTTCCAGCTGGTGGAGGAGAACGGGGTCGGGGATGGGAAGTCAGATTTCCTCTCCTTCTCCCCCGAGATGGTGGCAGAGCAGTTCACACTAATGGATGCT
Seq A exon
GTGAGTACTCATTCAGCGCTGGGTCAGTGCTGCTGCTCTGGGCACAAACCACTCTGTTCCCTGGCACCCCACTCCATCTTTTCCCAAAGAGACCCATCCCGTCCCTTTATCTTCTAG
Seq C2 exon
GAGCTGTTTAAGAAAGTGGTGCCTTACCACTGCCTGGGCTGCATCTGGTCCCAGCGAGACAAGAAGGGCAAAGAACACCTGGCACCCACCATCCGTGCCACGGTCTCGCAGTTCAATAGCGTGGCCAACTGTGTCATCGCCACGTGCCTCGGGGATCGGACCCTGAAGCCACAGCAGAGGGCTAAAGTGGTGGAGCGGTGGATCGAAGTGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(7.3=39.0)
A:
NA
C2:
PF0061714=RasGEF=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTTCTCCCCCGAGATG
R:
ATCCACCGCTCCACCACTTTA
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]