MmuINT0131353 @ mm9
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28399509-28400745:+
Coord C1 exon
chr2:28399509-28399906
Coord A exon
chr2:28399907-28400529
Coord C2 exon
chr2:28400530-28400745
Length
623 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GACACTGACCCCCTCCCTAGGAA
3' ss Score
9.21
Exon sequences
Seq C1 exon
CCCTGTCCCCAGCTCCAGTGCTGTCTCTGAAGCCAGCTTCACAGCTAGAACCTGCACTGCTGCTGACGCCCAGCCAAGTGGTGACATCAACTCCAGTACGAGAGCCCGCTGCGGCCCCAGTGCCAGTGCTGGCCTCCAGCCCAGTGGTGGCACCAGCTCCTGAGCTAGAACCAGTTCCAGAGCCACCTCAAGAGCCTGAGCCATCCCTAGCACTGGCTCCAGAGCTGGAGCCCGCCGTCTCACAGAGCCTGGAACTGGAGTCAGCTCCTGTGCCCACTCCTGCCTTAGAGCCTTCCTGGTCTCTGCCTGAAGCCACGGAGAATGGACTAACCGAGAAGCCTCACCTTCTGCTGTTCCCTCCTGACTTGGTGGCTGAACAGTTTACTCTGATGGATGCA
Seq A exon
GTGAGTGGCTTGGGGCCGGGGCAAGGCAGGCTTCCTTTTATCCTCCGCTGTCTAGACCTGTTTTCTGGTTCAGAGCCTTTGTCCCAGGGCAAGTCCTAGCTTCACAGTTAACAAACGTGTGATTAGAGCATACTACTTAACCCAAGGCATTGATTTCCCACCCCCGTGGTAGACATGGAAAGGGGGGAGGGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCTGAGAGATGGAGGAGTGCTCGCCAAGGTGCGCCTGGGTCCCCCTCCTCCACTCCACCCTGAAGCCCGTCTAACCTCAGCATTTATGAAGTGCTCACTGTGCACTGGAGACTGAGACTCAGGTGGGCCTATAGCAGCAGGCGTGCCTGCTAGCGAGGGGCAGCAGATGCTCTCAGAGGTGAGCAGGCAGGGCCACTGCTATGTGTGTGTTTCCTCTCCCTTCACTTTACCTGGTTTGCCTTGCACTGGGTACCCTCAGAAGTCAGGTGAAGGGGTGAGGGTCCCACAGGCTCAGCCACATCCTCACTCTTACATGCTGCAGCTTGGGCCTTTGGGCTGTGCGGGGCTGTGACACTGACCCCCTCCCTAG
Seq C2 exon
GAACTATTCAAGAAAGTCGTGCCCTACCACTGCCTGGGCTCCATCTGGTCCCAACGGGACAAGAAGGGCAAGGAGCACCTCGCGCCTACCATCCGCGCCACTGTCGCCCAGTTCAACAACGTGGCCAACTGTGTCATTACTACCTGCCTTGGGGACCAGAGTATGAAGGCTCCGGACAGGGCCCGGGTGGTGGAACACTGGATCGAGGTGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-Ralgds:NM_001145835:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.601 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(7.4=12.0)
A:
NA
C2:
PF0061714=RasGEF=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCTGAGCCATCCCTAG
R:
AATGACACAGTTGGCCACGTT
Band lengths:
347-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: