RnoINT0123940 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7121138-7122452:+
Coord C1 exon
chr3:7121138-7121535
Coord A exon
chr3:7121536-7122236
Coord C2 exon
chr3:7122237-7122452
Length
701 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
GACACTGATCCCCTCCCTAGGAG
3' ss Score
8.89
Exon sequences
Seq C1 exon
CCCTGTCCCCAGCTCCAGTGCTGTCTCTGAAACCAGCTTCACAGCTAGAACCAGCTCCCGCCCTGCTTCTGACGCCCAGCCGAGCTGTGGCATCCACTCCAGTCCGAGAGCCAGCCCCGGTGCCAGTACTGGCATCCAGCCCGGTGGTGGCGCCAGCCTCTGAGCTAGAACCAGCTCTGGAGCCGCCCCTAGACCCTGAGCCAACCCTCGCACCTGCTCCAGAGCTGGACCCCACTGTCTCACAGAGCCTCCACCTCGAGCCCGCTCCCGTGCCCGCTCCTGCATTAGAGCCTTCCTGGCCTCTGCCTGAAACCACGGAGAACGGACTGTGTGCAAAGCCTCACCTACTGCTGTTCCCTCCAGACTTGGTGGCTGAACAGTTTACGCTGATGGACGCA
Seq A exon
GTGAGTGGCTCACGGGGGCGGGGCGGGGCAGGCCTCCTTTTGTCCTCTGCTGTCTAGACCTGTTTTCTGGTTCAGAGCCTCTGTCCCAGGGCAAGTCCTAGCTCCACTCTTAACAAACATGTGATTAGGGCATTCTACTTAACCCAAAGCATTGATTTCCCACCCCCATGGTGGTCATGAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTGTGCATGAGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGTGTGTGGGGGTGCGTGTGTGCATGAGTGCGTGTGTGTGTGGGGGTGCGTGCGTGACTGCGTGTTGCATGCTGGCCTCTTAGGGATGGAGGAGTGCTTGCTGAGGTGTGCCTGGGCCACCCTCCTCCATTCCACCCCTAACCTCAGCATTGTGAAGTGCTTGCCGTGCACGGGAGACCGGGACACAGGGCAGGCTGTGACGTGCCCACTGGGGAGGGGCAGCAGATGCTCTCTGAGATGAGAGGCAGGAGCCACTGCTGTGTGTATGTTTCTTCTCCCCTTCATTTTTCCTACTTTGCCTTGCATTGGGTGCCCTCAGAAGTCAGGTGGAGGGGCGAGAGTCGCACAGGCTCAGACGCATCCTCACTCTTAAGTGCTGCAGCCTTTGCCTTGGGCTGTGCAGGGCCCAGTGACACTGATCCCCTCCCTAG
Seq C2 exon
GAGCTATTCAAGAAAGTTGTGCCCTACCACTGCCTGGGCTCCATCTGGTCCCAGCGGGACAAGAAGGGCAAGGAGCACCTCGCGCCCACCATCCGTGCCACTGTCGCCCAGTTCAACAACGTGGCCAACTGTGTCATCACCACCTGCCTTGGGGACCAGAGTATGAAAGCTTCGGACAGGGCCCGGGTGGTGGAACACTGGATCGAGGTGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(7.4=12.0)
A:
NA
C2:
PF0061714=RasGEF=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGACCCTGAGCCAACCCTC
R:
ACAGTTGGCCACGTTGTTGAA
Band lengths:
342-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]