MmuINT0134174 @ mm10
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33932454-33933260:+
Coord C1 exon
chr17:33932454-33932751
Coord A exon
chr17:33932752-33933008
Coord C2 exon
chr17:33933009-33933260
Length
257 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TTGTAACCTCTGCCCTGCAGGAA
3' ss Score
8.68
Exon sequences
Seq C1 exon
GGTAGCCATCTCTGTACTTTCAACTTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGGCGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
Seq A exon
GTGAGACCTTGACCTTTGACCCCACACTCTCTGCCCCCTTACTAACCTCTCCTTGGCTCCGGATCCTTTTCTTGCTTCCAATTGTCCTGGTGCAGTTCCTCTTCCGTGTCTGCTTCTCTGACCCTTCTCTGCCCTTCGCCCCTTGGCTGTTCCCCTTGAACTCTGGCCCCACTGGTCCCTGGCCACTTAAGAGCCTCAGATCCCTGATACTGGAAACTTGTCTGGCTTGACTCTAAATTGTAACCTCTGCCCTGCAG
Seq C2 exon
GAACTGTTTCTTAATCTGATCCCCTCTCAGTGTTTGGGAGGCCTCTGGGGTCACAGAGACCGGCCAGGACATTCTCACCTCTGCCCGTCTGTCCGAGCTACCGTCACACAGTTCAACAAGGTGGCGGGGGCGGTAGTTAGCTCTGTCTTGGGGGCCACCTCAATTGGAGAGGGGCCAAGAGAGGTGACTGTGAGACCACTGCGGCCCCCACAGAGGGCCCGGCTCCTAGAGAAGTGGATCCGTGTGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354:ENSMUST00000047503:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
NA
C2:
PF0061714=RasGEF=FE(37.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACCTCATCCGAAACCTC
R:
AGACAGAGCTAACTACCGCCC
Band lengths:
304-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types