RnoALTD0025766-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47724547-47724990:-
Coord C1 exon
chr10:47724890-47724990
Coord A exon
chr10:47724731-47724889
Coord C2 exon
chr10:47724547-47724641
Length
159 bp
Sequences
Splice sites
5' ss Seq
CTGGTACCC
5' ss Score
3.61
3' ss Seq
CTGGCTCATTTATTCTCCAGCGC
3' ss Score
7.74
Exon sequences
Seq C1 exon
CTTTCTGCCCACCCTGCCCTGGAGCTCTGAAGACCCCAACTGCTCCTGTAAGGGGCGGTGCTCTTCTGGGCTCCACCAGGAGCCTCTTCCTGCTCTGCCAG
Seq A exon
GTGCGTCCACGTGGCTTCACACTCTCCGTCTCCCCTCCCCCTCCCTGTCCTTATCGTTCCCTTTCGTCTCCATGGAGATACACCGCCTAGGCTTGCCTGCATCCCAGCTTCTGCCAGGGATTCGAGCTGGGCTTGGTTCATCCCTCCTCCGAAGCCCTG
Seq C2 exon
CGCTGACAGCTAGGCAGAGCCACCGAGGAGCCCATCCCCCTGCTCCACCCTCCACCTGCTCCTCTAGCTGTCCGTCCTACCGGGAAAAGATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTGCCCACCCTGCC
R:
CGAGATCTTTTCCCGGTAGGA
Band lengths:
196-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]