RnoINT0127578 @ rn6
Intron Retention
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47724547-47725172:-
Coord C1 exon
chr10:47724731-47725172
Coord A exon
chr10:47724642-47724730
Coord C2 exon
chr10:47724547-47724641
Length
89 bp
Sequences
Splice sites
5' ss Seq
CTGGTACCC
5' ss Score
3.61
3' ss Seq
CTGGCTCATTTATTCTCCAGCGC
3' ss Score
7.74
Exon sequences
Seq C1 exon
ATTCCAGTGACATACCCTGGGAGAGGGTGACAAGATGCACTGTGTCACATAGAACACAGTGGCATCATGTAGTGCTGCGTATAGTGGATGCTCAGTCAAAGTAGGTGTGGGATTGAATGGACCTAAAGCTTCTCTGTCCCTAGGTCTGCCCCAGTTGCACACTCCTGTTTTCTACATTGCTCCTTTCTGCCCACCCTGCCCTGGAGCTCTGAAGACCCCAACTGCTCCTGTAAGGGGCGGTGCTCTTCTGGGCTCCACCAGGAGCCTCTTCCTGCTCTGCCAGGTGCGTCCACGTGGCTTCACACTCTCCGTCTCCCCTCCCCCTCCCTGTCCTTATCGTTCCCTTTCGTCTCCATGGAGATACACCGCCTAGGCTTGCCTGCATCCCAGCTTCTGCCAGGGATTCGAGCTGGGCTTGGTTCATCCCTCCTCCGAAGCCCTG
Seq A exon
GTACCCGCAGCCCTGTCTCCTCCCCCTGGGGTGAATCCACCCTCCTTTACAGTCTCTCTTTTTTTCTGACTGGCTCATTTATTCTCCAG
Seq C2 exon
CGCTGACAGCTAGGCAGAGCCACCGAGGAGCCCATCCCCCTGCTCCACCCTCCACCTGCTCCTCTAGCTGTCCGTCCTACCGGGAAAAGATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364:ENSRNOT00000003228:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATGGAGATACACCGCC
R:
GGTAGGACGGACAGCTAGAGG
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]