RnoALTD0025890-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001331 | Rnf34
Description
ring finger protein 34 [Source:RGD Symbol;Acc:628636]
Coordinates
chr12:39172881-39187961:-
Coord C1 exon
chr12:39187861-39187961
Coord A exon
chr12:39187828-39187860
Coord C2 exon
chr12:39172881-39173099
Length
33 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
ACACGTATGTTTCTTTTCAGGCG
3' ss Score
9.02
Exon sequences
Seq C1 exon
ACACGGGAGTGGAACTGTTGGGTCATAGGTGGCCTTATGCTTCATGTTCTTAAACGATCGCCAGAGTTCCGAAACGGCAACCTGACCGTGTGATATCACCG
Seq A exon
GTGAGTTCTCTGTGTCTTCAATAAGGCCTACAA
Seq C2 exon
GCGGGTGCTACCTCTATGTGGGCTTCATGCTGTGGACTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGAGGCCAGCAGGCAGGATTCCCAGGAAGCACTGGTCCATTCAGGTTTACACCGAGTTCTGACTTTCCTACCTACCCACCAGCAGCTACAGAAGGACCCAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCAGTCTTTAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001331-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACGATCGCCAGAGTTCCG
R:
TGACAGCTCCAGTTCCCATGA
Band lengths:
121-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]