RnoEX0076503 @ rn6
Exon Skipping
Gene
ENSRNOG00000001331 | Rnf34
Description
ring finger protein 34 [Source:RGD Symbol;Acc:628636]
Coordinates
chr12:39172881-39185168:-
Coord C1 exon
chr12:39185068-39185168
Coord A exon
chr12:39184069-39184234
Coord C2 exon
chr12:39172881-39173099
Length
166 bp
Sequences
Splice sites
3' ss Seq
GGTGATGTCTTTCCTGACAGGGT
3' ss Score
7.98
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCGCCGCCTTAGAAGGAAGGAGGTCCGTTGTGTGAGCAGTCTGCTATGGTGCTGAGTTCCCGGGTAGAGCCGACCGAGCCGAGGCGGTCGCGGCCATGAAG
Seq A exon
GGTTCGATTCATCTCGTGGACGAAGTGTATTGGCTTGGGGCTGCTAGGTTAACGACCTTTTACAAAGTGTCAAAGATTTACTGCGGACGATTGAAAAGAGCGTCAAGTAGAGAAAATCAGCAAGTGTTTTGTCCAAGTCCTTCATTGTATTAGTCAAGGAGTAGAG
Seq C2 exon
GCGGGTGCTACCTCTATGTGGGCTTCATGCTGTGGACTGCTGAATGAAGTCATGGGAACTGGAGCTGTCAGAGGCCAGCAGGCAGGATTCCCAGGAAGCACTGGTCCATTCAGGTTTACACCGAGTTCTGACTTTCCTACCTACCCACCAGCAGCTACAGAAGGACCCAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCAGTCTTTAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001331_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001799fB12579
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAAGGAGGTCCGTTGT
R:
GTAGCTGCTGGTGGGTAGGTA
Band lengths:
249-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]