RnoALTD0026334-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000021513 | Rtn4rl2
Description
reticulon 4 receptor-like 2 [Source:RGD Symbol;Acc:727797]
Coordinates
chr3:72282982-72289362:-
Coord C1 exon
chr3:72289262-72289362
Coord A exon
chr3:72288877-72289261
Coord C2 exon
chr3:72282982-72283463
Length
385 bp
Sequences
Splice sites
5' ss Seq
CATGTGGGT
5' ss Score
2.93
3' ss Seq
TCACTCTGCTCTCCCCACAGGTC
3' ss Score
14.14
Exon sequences
Seq C1 exon
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGCCGCCCCCTCCCCCGATCGTCGAGACAAGATGCTGCCCGGGCTCCGGCGCCTGCTGCAAG
Seq A exon
GTAGGGACACCGGCCGGCGGGAGGACACTAGAGAGAGGCGCCCCTCTCCTTGGGCACGAGGGTGGGGCAGTGAAGGGGGTGGGGTGGGTAAGGAGCAAAAAACCGCTTAGCGCGGGAGCCGCGCCTCCGCCCCCAGAGCTGCCAGCCGCAGGAGGGCACTGGGCTTAGAGCCTGCGGGAATGTGCGGGGAGCTCGTGACCAAGGGGGGACGCGGAGGGCAGACCGAACTGGTTAGGAGGAAGAGAAAGAGGCTCAGGTTCTGTTGTCCCGGCTCCACCTGCTCCGGGGGACGCTGAGGACTCGGGCCGGCTGGGGAAGCGCCGACTCAGCAACTCCTCGTGCCCAGTGTCTCAGCACTTTCCAGTCACCTGGGAAGACAAGCCAT
Seq C2 exon
GTCCTGCCTCAGCCTGCCTCCTGCTGACACTCCTGGCCCTCCCTCCTGTGACCCCCAGCTGCCCTATGCTCTGCACCTGCTACTCCTCTCCGCCCACAGTGAGCTGCCAGGCCAACAACTTCTCCTCGGTGCCGCTGTCCTTGCCACCCAGTACACAGCGACTCTTCTTGCAGAACAACCTCATTCGCTCACTGCGGCCAGGAACTTTTGGGCCCAACCTGCTCACCCTGTGGCTCTTCTCCAACAACCTCTCCACCATCTACCCTGGCACCTTCCGCCATCTGCAGGCCCTAGAGGAACTGGACCTCGGTGACAATCGGCACCTGCGCTCCCTGGAGCCTGACACCTTCCAGGGCCTGGAGAGGCTGCAGTCACTACATCTGTACCGGTGCCAGCTCAGCAGTCTGCCTGGCAACATCTTCCGAGGCCTGGTCAGCCTACAGTACCTCTACCTCCAGGAGAACAGCCTGCTCCACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021513-2-0,3-0,4-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=37.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATCGTCGAGACAAGATGC
R:
CGAGGTCCAGTTCCTCTAGGG
Band lengths:
357-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]