RnoALTD0026799-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018876 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:RGD Symbol;Acc:1305930]
Coordinates
chr3:3833389-3833926:-
Coord C1 exon
chr3:3833819-3833926
Coord A exon
NA
Coord C2 exon
chr3:3833389-3833457
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGACAATGTCTTTTTGCAGATT
3' ss Score
9.73
Exon sequences
Seq C1 exon
ACTGTGAACGCCCCCATGGCGGGGACCTGCACCCCCAGTTCTTCGGCTTTCGGCCGACGTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCGGTAGGAGACACAG
Seq A exon
NA
Seq C2 exon
ATTTTGGCTATGGAAAGGGGAAATGTACTAAACAAGGCCCGTCGGGAGCCCATGAGACGCGCTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018876-1-5,2-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAACGCCCCCATGG
R:
CTCCAAAGCGCGTCTCATGG
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]