RnoALTD0026870-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3883703-3890733:-
Coord C1 exon
chr3:3890633-3890733
Coord A exon
NA
Coord C2 exon
chr3:3883703-3887349
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
TCTTCTGTTTTCTTTTTTAGCAC
3' ss Score
12.04
Exon sequences
Seq C1 exon
TGCGGCTGCTGCTGGATACGCGCTAGTTCCCACTACTGCCGCCGCCGTCGCCGGCTAGGTTTCAGTTCGCGGCTCCTGAGAAGCCAACCGCAGCTGAGCGG
Seq A exon
NA
Seq C2 exon
CACAAATTACAGAAAAGACCTACCCTGCCTCCTTTATAAGCAGCATCTCCTGCAGGAAAGACTCCACCATGCAGCCACCACCTCAGGCAGTCCCGTCTGGTGTGGCTGGCCCACCCCCAGCTGGGAATCCTCGAAGCTCGTTCTGGGCCAACAGCCCTTACAGGAAGCCAGCCAATAATAATGCACCAGTGGCTCCCATAACACGCCCACTGCAGCCAGTAACGGATCCGTTTGCTTTTAACAGACAGACTCTTCAAAACACACCAGTGGGCAGTTCATCCAAAAGCAGCCCACCTAATTTGCCTGGCCCAGCCCTCCCTGTTTTTTCTCAGTGGCCTGGTTTGCCTGTGCCTCCCACAAATGCTGGGGATAGCTCCACAGGACTTCATGAGCCTCTGCCAGGAACTCTGTCACAGCCTAGAGCAGACCCCAGTCTATTTCCTCCTGCATCTACCCCTTCTTCATTGCCTGGGCTGGAGGTGAACAGGAGTGCTGAGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-2-3,3-3,4-3-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.949
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGTTTCAGTTCGCGGCTC
R:
GTGTTATGGGAGCCACTGGTG
Band lengths:
251-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]