RnoALTD0026950-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134312700-134313561:-
Coord C1 exon
chr3:134313478-134313561
Coord A exon
chr3:134313407-134313477
Coord C2 exon
chr3:134312700-134312756
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAAGTAATG
5' ss Score
2.09
3' ss Seq
TCAAATATCATCATTTCTAGGTA
3' ss Score
7.72
Exon sequences
Seq C1 exon
TTGCTGACAAATTGGAAAAAAGTGAAGGTATTCCCGTGGAAAAAGTGAGGCTAACCGAGAGACCTGAGAATCTGAGTTCCAACA
Seq A exon
GTGAGATTTTGGATTGGGACATATACCAATACTATAAGTTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq C2 exon
GTATCTCTTGGACAATTGCATCTAATTGGGAGAAAAGGTCTAGATCAAGATTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-14-15,15-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(0.1=0.0)
A:
NA
C2:
PF082387=Sel1=FE(52.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTGAAGGTATTCCCGTGGA
R:
AATCTTGATCTAGACCTTTTCTCCCA
Band lengths:
119-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]