MmuALTD1035312-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140262667-140263523:-
Coord C1 exon
chr2:140263440-140263523
Coord A exon
chr2:140263369-140263439
Coord C2 exon
chr2:140262667-140262723
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAAGTAATG
5' ss Score
2.09
3' ss Seq
CTTTCAAAAATCATTTCTAGGTA
3' ss Score
7.66
Exon sequences
Seq C1 exon
TTGCTGATAAATTGGAAAAAAGTGAAGGTATTCCCGTGGAAAAAGTGAGGCTAACCGAGAGACCTGAGAATCTGAGTTCCAACA
Seq A exon
GTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq C2 exon
GTATCTCTTGGACAATTACATCTAATTGGGAGAAAGGGACTAGATCAAGATTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764-19-19,20-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(0.1=0.0)
A:
NA
C2:
PF082387=Sel1=FE(52.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTGAAGGTATTCCCGTGGA
R:
ATCTTGATCTAGTCCCTTTCTCCCA
Band lengths:
119-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types