MmuEX6105533 @ mm10
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140240899-140265779:-
Coord C1 exon
chr2:140265698-140265779
Coord A exon
chr2:140244100-140244265
Coord C2 exon
chr2:140240899-140241071
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTTCCCGTCTTCAGCTT
3' ss Score
9.63
5' ss Seq
CTAGTAAGA
5' ss Score
5.2
Exon sequences
Seq C1 exon
GGGTACAGATACTTGTCAGGAATTAACGTTCTGCAAAATTGTGAAGTTGCCCTAAATCATTACAAGAAAGTGGCAGATTATA
Seq A exon
CTTTACAAAGGTGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTAACGGCCTATTTCGCCTATAAGGATGGGGACATAGACTCTTCTCTTATTCAGTATGCATTGCTTGCCGAAATGGGATATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTA
Seq C2 exon
GGAACGCTTTTGCTAGAGTAAAAATTGGAGATTACCATTACTATGGCTACGGGACTAAGAAGGACTACGAAACAGCAGCCACACACTACAGCATCGCAGCAGACAAGCATCACAGTGCACAAGCAATGTTCAACCTGGCATATATGTATGAACATGGCTTGGGTATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764_MULTIEX1-8/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=PD(25.0=16.1)
C2:
PF082387=Sel1=WD(100=62.1),PF082387=Sel1=PU(52.9=31.0)
Main Skipping Isoform:
ENSMUST00000122367fB16409
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTCAGGAATTAACGTTCTGCA
R:
TGCAATACCCAAGCCATGTTCA
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types