BtaEX0031824 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020120 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr13:7585720-7587356:-
Coord C1 exon
chr13:7587208-7587356
Coord A exon
chr13:7585914-7586079
Coord C2 exon
chr13:7585720-7585794
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTCCAAACACAGCTT
3' ss Score
5.82
5' ss Seq
CTAGTAAGA
5' ss Score
5.2
Exon sequences
Seq C1 exon
CTGGCTCTGGAGTATGGAAGGATTATAAACTTGCCTTCAAATATTTTTACTTGGCATCTCAGAGTGGGCAGCCCCTAGCCATTTATTACCTGGCTGAGATGTACGCCACAGGAACAGGAGTGTTGCGATCATGCAGAACTGCTGTGGAG
Seq A exon
CTTTATAAAGGTGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTGACAGCATACTTTGCTTATAAGAATGGTGATATAGATTCTTCTCTTGTTCAGTACGCACTGCTCGCAGAAATGGGGTATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTA
Seq C2 exon
AAAAAGCTAAAATTCTCGAAAAAGAGAAGATGTATCCAATGGCACTTCTCCTGTGGAATCGAGCTGCCATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020120_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(63.9=46.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTGGAGTATGGAAGGA
R:
GAATGGCAGCTCGATTCCACA
Band lengths:
220-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development