RnoEX6019453 @ rn6
Exon Skipping
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134291990-134293533:-
Coord C1 exon
chr3:134293385-134293533
Coord A exon
chr3:134292179-134292344
Coord C2 exon
chr3:134291990-134292064
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTCCCCGTCTTCAGCTT
3' ss Score
9.7
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTGGCTCTGGAGTATGGAAGGATTATAAGCTTGCCTTCAAATATTTTTACTTGGCATCTCAGAGTGGGCAGCCTCTCGCCATTTATTATCTAGCCGAGATGTACGCAACTGGCACCGGAGTGCTGAGATCCTGCAGAACGGCCGTGGAG
Seq A exon
CTTTATAAAGGAGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTGACAGCCTACTTTGCCTATAAGGATGGGGACGTAGATTCTTCTCTAATTCAGTACGCGTTGCTTGCCGAAATGGGATATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCCA
Seq C2 exon
AAAAAGCTAAAATTCTGGGGAAAGAGAAGATGTATCCAATGGCACTTCTGCTATGGAACCGAGCTGCCATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(63.9=46.0),PF082387=Sel1=PU(69.4=50.0)
A:
PF082387=Sel1=PD(25.0=16.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTGGAGTATGGAAGGA
R:
AATGGCAGCTCGGTTCCATAG
Band lengths:
219-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]