GgaEX1051574 @ galGal3
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
NA
Coordinates
chr5:43386509-43388204:-
Coord C1 exon
chr5:43388056-43388204
Coord A exon
chr5:43387307-43387472
Coord C2 exon
chr5:43386509-43386583
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTATTCCTCTGCAGTTG
3' ss Score
9.57
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATGGTATTGGAGTCAAGAGAGACTATAAACAAGCTTTGAAATATTTTAATTTGGCCTCCCAGGGTGGCCATATTCTGGCTTTTTATAATCTGGCTCAGATGCATGCTACTGGCACTGGAGTGATGCGTTCTTGTCATACTGCTGTTGAG
Seq A exon
TTGTTTAAGAATGTTTGTGAACGTGGACGCTGGTCTGAAAGACTTATGACTGCCTACAACAGCTATAAAGATGGCGATTCAAATTCTGCTGTTGTTCAGTATCTTCTTTTGGCAGAACAAGGCTATGAAGTTGCACAAAGCAATGCTGCTTTCATACTTGATCAAA
Seq C2 exon
AAGAAGCTAGCATAGTAGGAGAAAATGAAACATATCCTCGAGCATTGCTTCACTGGAATAGAGCAGCTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(63.9=46.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTATTGGAGTCAAGAGAGAC
R:
AAGCTGCTCTATTCCAGTGAAGC
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]