RnoEX0079188 @ rn6
Exon Skipping
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115581128-115582615:-
Coord C1 exon
chr6:115582467-115582615
Coord A exon
chr6:115581489-115581654
Coord C2 exon
chr6:115581128-115581202
Length
166 bp
Sequences
Splice sites
3' ss Seq
TAGTTCTCCTCTTTGCACAGTTG
3' ss Score
5.1
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
ATGGCATTGGAGTCAAGAGAGATTATAAACAGGCCTTGAAGTATTTTAATTTAGCTTCTCAGGGAGGCCATATCTTGGCTTTCTATAACCTAGCACAGATGCACGCCAGCGGCACAGGGGTGATGAGATCCTGCCACACTGCAGTGGAG
Seq A exon
TTGTTTAAGAACGTGTGTGAGCGTGGTCGCTGGTCAGAGAGGCTGATGACCGCCTACAACAGCTATAAAGACGACGACTACAACGCCGCTGTGGTCCAGTACCTCCTGCTGGCGGAGCAGGGCTACGAGGTGGCGCAGAGCAACGCAGCCTTCATCCTCGACCAGA
Seq C2 exon
GAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCTTTGCTGCATTGGAATAGGGCCGCCTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-'30-26,'30-25,31-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(63.9=46.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTGGAGTCAAGAGAGA
R:
GAGGCGGCCCTATTCCAATG
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]