MmuEX6082374 @ mm10
Exon Skipping
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:91814619-91815914:-
Coord C1 exon
chr12:91815766-91815914
Coord A exon
chr12:91814974-91815139
Coord C2 exon
chr12:91814619-91814693
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCCTCTTTACACAGTTG
3' ss Score
8.52
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATGGCATTGGAGTCAAGAGAGATTATAAGCAGGCCTTGAAGTATTTTAATCTGGCTTCTCAAGGAGGCCATATCTTGGCTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAGTGGAG
Seq A exon
TTGTTTAAGAATGTGTGTGAGCGAGGTCGCTGGTCAGAGAGACTGATGACTGCCTACAACAGCTATAAGGATGAGGACTACAATGCTGCAGTGGTCCAGTACCTCCTGCTGGCTGAGCAGGGCTACGAGGTGGCGCAGAGCAACGCAGCCTTCATCCTCGACCAGA
Seq C2 exon
GAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCTTTACTGCATTGGAACAGGGCCGCCTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-'30-25,'30-23,33-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(63.9=46.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTGGAGTCAAGAGAGA
R:
GAGGCGGCCCTGTTCCAAT
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types