GgaEX1051574 @ galGal4
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr5:40224715-40226410:-
Coord C1 exon
chr5:40226262-40226410
Coord A exon
chr5:40225513-40225678
Coord C2 exon
chr5:40224715-40224789
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTATTCCTCTGCAGTTG
3' ss Score
9.57
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATGGTATTGGAGTCAAGAGAGACTATAAACAAGCTTTGAAATATTTTAATTTGGCCTCCCAGGGTGGCCATATTCTGGCTTTTTATAATCTGGCTCAGATGCATGCTACTGGCACTGGAGTGATGCGTTCTTGTCATACTGCTGTTGAG
Seq A exon
TTGTTTAAGAATGTTTGTGAACGTGGACGCTGGTCTGAAAGACTTATGACTGCCTACAACAGCTATAAAGATGGCGATTCAAATTCTGCTGTTGTTCAGTATCTTCTTTTGGCAGAACAAGGCTATGAAGTTGCACAAAGCAATGCTGCTTTCATACTTGATCAAA
Seq C2 exon
AAGAAGCTAGCATAGTAGGAGAAAATGAAACATATCCTCGAGCATTGCTTCACTGGAATAGAGCAGCTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-'22-26,'22-25,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(63.9=46.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTATTGGAGTCAAGAGAGAC
R:
AAGCTGCTCTATTCCAGTGAAGC
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]