DreEX0064945 @ danRer10
Exon Skipping
Gene
ENSDARG00000004581 | sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041001-122]
Coordinates
chr20:27098560-27099758:+
Coord C1 exon
chr20:27098560-27098708
Coord A exon
chr20:27098788-27098953
Coord C2 exon
chr20:27099684-27099758
Length
166 bp
Sequences
Splice sites
3' ss Seq
TAATGTGTATTTGTAAACAGCTC
3' ss Score
6.19
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGCATTGGAGTGAAGCGTGATTACAAGCAGGCCCTTAAATTCTTCAACCTGGCATCGCAAGCGGGTCACATCCTAGCCTTTTATAACCTTGCCCAAATGCATGCGACAGGAACAGGGGTCATGCGCTCCTGTCACACTGCCGTAGAG
Seq A exon
CTCTTCAAGAACGTGTGCGAGCGCGGCCGCTGGTCTGAGAGACTCATGGCGGCCTACAGAAGCTTTAAGGAGGGTGATATGGACTCTGCTCTTATTCAGTATCTCCTGTTGGCAGAACAGGGCTATGAGGTTGCACAGAGCAATGTGGCCTTCGTCCTTGATCAAA
Seq C2 exon
AGGGGTCGCAGATCTTCAATGAAAATGAAACATACCCACGGGCTTTGCTTCATTGGACCAGAGCAGCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004581-'18-18,'18-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(63.9=46.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCATTGGAGTGAAGCGTG
R:
CAGCTGCTCTGGTCCAATGAA
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]