MmuEX6105526 @ mm10
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140262667-140265779:-
Coord C1 exon
chr2:140265698-140265779
Coord A exon
chr2:140263369-140263523
Coord C2 exon
chr2:140262667-140262723
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGGTTTGTTTCCATTCACAGTTG
3' ss Score
8.79
5' ss Seq
CAAGTAATG
5' ss Score
2.09
Exon sequences
Seq C1 exon
GGGTACAGATACTTGTCAGGAATTAACGTTCTGCAAAATTGTGAAGTTGCCCTAAATCATTACAAGAAAGTGGCAGATTATA
Seq A exon
TTGCTGATAAATTGGAAAAAAGTGAAGGTATTCCCGTGGAAAAAGTGAGGCTAACCGAGAGACCTGAGAATCTGAGTTCCAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq C2 exon
GTATCTCTTGGACAATTACATCTAATTGGGAGAAAGGGACTAGATCAAGATTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764_MULTIEX1-1/9=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=PU(0.1=0.0)
C2:
PF082387=Sel1=FE(52.9=100)
Main Skipping Isoform:
ENSMUST00000122367fB16409
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACAGATACTTGTCAGGAAT
R:
ACTGTAATCTTGATCTAGTCCCTTT
Band lengths:
139-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types