HsaEX6077247 @ hg19
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:15897]
Coordinates
chr20:13865993-13868496:-
Coord C1 exon
chr20:13868415-13868496
Coord A exon
chr20:13866934-13867088
Coord C2 exon
chr20:13865993-13866049
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGGCTTGTTTTTATTCACAGTTG
3' ss Score
7.65
5' ss Seq
CAAGTAATG
5' ss Score
2.09
Exon sequences
Seq C1 exon
GGGTACAGATATTTGTCGGGAATCAATGTTCTACAGAATTGTGAAGTTGCCCTAAGTTATTACAAGAAAGTGGCAGATTATA
Seq A exon
TTGCTGACACATTTGAAAAAAGTGAAGGTGTTCCAGTGGAAAAAGTGAGACTAACGGAAAGACCTGAAAATCTGAGTTCTAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq C2 exon
GTCTCTCTTGGACAATTACATCTAATTGGCAGGAAAGGTCTAGATCAGGATTACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251-'14-17,'14-16,15-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(78.8=92.9)
A:
PF082387=Sel1=PU(0.1=0.0)
C2:
PF082387=Sel1=FE(52.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACAGATATTTGTCGGGAA
R:
TAGTAATCCTGATCTAGACCTTTCCT
Band lengths:
138-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)