RnoEX0079200 @ rn6
Exon Skipping
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134312700-134315726:-
Coord C1 exon
chr3:134315645-134315726
Coord A exon
chr3:134313407-134313561
Coord C2 exon
chr3:134312700-134312756
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGGTCTGTTTCTGTCCACAGTTG
3' ss Score
10.74
5' ss Seq
CAAGTAATG
5' ss Score
2.09
Exon sequences
Seq C1 exon
GGGTACAGATACTTGTCAGGAATTAATGTTCTGCAAAATTGTGAAGTTGCTCTAAATCATTACAAGAAAGTGGCAGATTATA
Seq A exon
TTGCTGACAAATTGGAAAAAAGTGAAGGTATTCCCGTGGAAAAAGTGAGGCTAACCGAGAGACCTGAGAATCTGAGTTCCAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAGTTTTTGGCAGAAAGAGGAGATGTTCAGATACAA
Seq C2 exon
GTATCTCTTGGACAATTGCATCTAATTGGGAGAAAAGGTCTAGATCAAGATTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF082387=Sel1=PU(0.1=0.0)
C2:
PF082387=Sel1=FE(52.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACAGATACTTGTCAGGAAT
R:
TCTTGATCTAGACCTTTTCTCCCA
Band lengths:
132-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]