RnoALTD0027220-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64891907-64915666:-
Coord C1 exon
chr10:64915566-64915666
Coord A exon
NA
Coord C2 exon
chr10:64891907-64892569
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
ATCATTCATTATTATTTCAGGAC
3' ss Score
7.39
Exon sequences
Seq C1 exon
TCTTCATTATCGGCCCAGGATGGAGCTGCCACAAGGGCAGGCGGGCCTCACCAGCTGCCTCACTGATGTGCATCTTTCCAGGTTACCCTTGTAGCTGTCAG
Seq A exon
NA
Seq C2 exon
GACTCTCCTCAGAGGCTCCAATCACGGGGGAAGGTCAAGCCACGGGCATCAGGGAGATGGATGGGGAGCTGACCGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCACTTCGTCACCACAGCCCCTACCCTCAAGCTACTCAACCACCACCCACTTCTGGAGGAATTTCTTCAAGAGGGGCTAGAAGGGAGAGAGGAAGCTCCGAGGCCGGCACTGCCCTTCCAGCCAGACTCACCTACACCCTTTACTCCAAGCCCCCTTCCCCGCCTCACCAACCAGGACAACCGCCCTGTCTTTACCAGTCCGACGCCAGCTGTAGCTGCGGCACCCACGCAGCCCCACTCCAGAAAGAAACCCTGGAACCCAGAGTCAGAGCCCCCGGAGCTTTACATCACATCTCCCCTCCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCACCCAGAGGACAGACCCAGCACTACACCCCCCAGCCAAGCATGGACTCCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.950
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTATCGGCCCAGGATGGA
R:
TCTCTCCCTTCTAGCCCCTCT
Band lengths:
297-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]