RnoEX0079950 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64891178-64915148:-
Coord C1 exon
chr10:64915040-64915148
Coord A exon
chr10:64891907-64892569
Coord C2 exon
chr10:64891178-64891311
Length
663 bp
Sequences
Splice sites
3' ss Seq
ATCATTCATTATTATTTCAGGAC
3' ss Score
7.39
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTCCCCAGTCCCCCTACCGCGACCCCAACCCGGGGCGCGGCCGCAAGCAGCACCATGCGCCCAGCAGCCCTGCTGCTCCTGCCCTCGCTGCTGGCGCTCCTGGCTCACG
Seq A exon
GACTCTCCTCAGAGGCTCCAATCACGGGGGAAGGTCAAGCCACGGGCATCAGGGAGATGGATGGGGAGCTGACCGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCACTTCGTCACCACAGCCCCTACCCTCAAGCTACTCAACCACCACCCACTTCTGGAGGAATTTCTTCAAGAGGGGCTAGAAGGGAGAGAGGAAGCTCCGAGGCCGGCACTGCCCTTCCAGCCAGACTCACCTACACCCTTTACTCCAAGCCCCCTTCCCCGCCTCACCAACCAGGACAACCGCCCTGTCTTTACCAGTCCGACGCCAGCTGTAGCTGCGGCACCCACGCAGCCCCACTCCAGAAAGAAACCCTGGAACCCAGAGTCAGAGCCCCCGGAGCTTTACATCACATCTCCCCTCCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCACCCAGAGGACAGACCCAGCACTACACCCCCCAGCCAAGCATGGACTCCAACCCAGGAGGGTCCTGGAGACATGGGCAGACCTTGGGTTCCAGAGATCATGTCTAAGACCACAGGGCTTGGTATCGAGGGGACCATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACCACCACCACCATCATTACCACCGTCACCACAATTCAGCCACCAG
Seq C2 exon
GCCCCTGTAGCTGGAATTTCTCAGGCCCGGAGGGCTCTCTGGATTCCCCTGCGGTCCCCAGCGTCCCCTCTGATGTTGGCCTGGACTGTCTCTACTACATCTCTGTCTACCCTGGATATGGAGTCGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'2-2,'2-0,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.950 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCAGTCCCCCTACC
R:
TCTCGACTCCATATCCAGGGT
Band lengths:
238-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]