DreEX0065579 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24277582-24456612:+
Coord C1 exon
chr15:24277582-24277997
Coord A exon
chr15:24453518-24454222
Coord C2 exon
chr15:24456479-24456612
Length
705 bp
Sequences
Splice sites
3' ss Seq
GTACTTTAATGTCTCTTTAGGAT
3' ss Score
9.45
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
AACGCTAGCACTCGAGAGGCATTTAATCGAGGGCACTATTAGATTATGTACGGTACAAACTTTGCGCGAAGCCTGAAGTTGTTCCAGTTGCTGACGCTAGGAGCTGTCCGCGGTGCTGAAACGGCTCGACTCAGTCTGAGAGGTGCTGACAGAAATTGAACATTCTCTGGCTTCTCCTCCGTCCACAATTACAAATCTGATCAGAGCTGCCCGTTTCGCGTGGCGACCTCTTCTCCTCGCGGAACTCCTGCGTCTTGCTCCTCTTTAATTATTCGGAAAGTGTTTTAATGCAAGGACATATTTTCTGTGAAAGGATCCCACTGCCGTGAGCATGAACTCGACTAGAAATTACAAACCAAGCATGGTCGTTCTGATCCTGGTCGTATTTGCTGGTATTGGGATGGCACGAGGGCAAG
Seq A exon
GATCCTTAACAGATGGGAGGTTAGCAGTCACCCAAAGAGGAGGTCAGCTAGAAGCAGAGGACGGGTCCAACCCATATCACACCACCCAGGACACAGACAGAGAATTACCCTTGTTCACCACGGCTCCCCCTTACAGTGGCCTCGACCACCATCCGCCTTTTAAGCCCTACCCGCCTTATGACCCACGTGGCCAAAGCCACGGCCAGTATTTTCAGGACAGTGGAGGGGCAGCGCACCATCCCACAATGCCATCCTCCAGTTCCCATCTCCTCCAGGACCCATCTACACAGTTGGTCCCACATGAAGAAGCACTGCCTTTTTCTGATGTAGCGGCTCCCAGAAGCACCACAATGGCTCCATCGGCTGCTGCCCTCACCCAGCCACATGTGCCCAAAATCCAACACAAACTTTCAGTAGAAACGCAGAGAAGAAGTTCAGATCCATCCATTTCTTTGAGCACCACTGATGCGCACACATCTGCACTGCCTGTTTCCAAACACTTAGATAGAGAAGACTTCACTCAAACTTTCAACATCAAGCCACAGGATGTGACTGTAGAGAGAAAGCCCTCTGTTGAACATGATGAATCTCCAGAAAGTGATGTTGATGTAAAAGCATCGTCATCAGTGGCTGGTGATTTGGATGACGAGACCACCACATCCACCATCATCACCACAACGGTCATTACCAACATGCAGACGCCAG
Seq C2 exon
CTCCGTGTAGCGCCAATTTCACATCGCCGGGAGGCTACATAGAGACACCACAGCAGGCTAGGAGCTGGTACAATGCCAATGTGGACTGCACATACACCGTGACCGTCTACATGGGCTATGGGGTGGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-'0-3,'0-2,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.956 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043115=CUB=PU(40.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGGCTCGACTCAGTCTG
R:
AGCCTGCTGTGGTGTCTCTAT
Band lengths:
358-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]