MmuEX0041884 @ mm10
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77930800-77954883:+
Coord C1 exon
chr11:77930800-77931114
Coord A exon
chr11:77953408-77954067
Coord C2 exon
chr11:77954750-77954883
Length
660 bp
Sequences
Splice sites
3' ss Seq
ATCATTCATTCTTATTTCAGGAC
3' ss Score
9.42
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TGCCGCTGGGTCTTCTGCGCCTTTGCTTGAGACTTTACGGTAAGCCGCTCCTCCTGCGCCCCCGCCCCCAGCCCCGCGCGGCGATCCCGGGCGCCGACGCCAGGCGCTGGCCGTGGTGCTGATTCTGTCAGGCGCTGGCGGCGGCGGCGGCGGCCCCGCTGCTCTCCCCGGGACCGGCTCTGCCCCCCGCGCCCACGCCTCTCCCAGTCCCCAGTTCCCCTACCGCGGCCCCGACCCGGGGCGCGGCCGCAAGCAGCACCATGCGCCCAGCAGCCCTGCTGCTCCTGCCCTCGCTGCTGGCGCTCCTGGCTCACG
Seq A exon
GACTCTCCTCAGAGGCTCCGATCACGGGGGAAGGTCATGCCACGGGCATCAGGGAGACGGATGGGGAGCTGACCGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCACTTCGTCACCACAGCCCCTACCCTCAAGCTGCTCAACCACCACCCACTTCTGGAAGAATTTCTTCAAGAGGGGCTAGAAAGAGAGGAAGCGCCGCAGCCTGCACTGCCCTTCCAGCCGGACTCACCTACACACTTTACTCCAAGCCCCCTCCCCCGCCTCACCAACCAGGACAACCGCCCCGTCTTTACCAGTCCGACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCACTCCAGGGAGAAACCTTGGAACCTAGAATCCAAACCCCCTGAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAGACCACAGGGCTTGGTGTCGAGGGAACCATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACTACCACCATCATTACCACTACTGTCACCACAGTTCAGCCACCAG
Seq C2 exon
GCCCCTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGCCTGGACTGTTTCTACTATATCTCTGTCTACCCTGGATATGGAGTAGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'0-6,'0-4,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.946 C2=0.470
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000093995fB16521
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCTTTGCTTGAGACTTT
R:
GGGGAATCCAGAGAGCCCTC
Band lengths:
349-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types