BtaEX6085560 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20904782-20927187:-
Coord C1 exon
chr19:20926993-20927187
Coord A exon
chr19:20905637-20906272
Coord C2 exon
chr19:20904782-20904915
Length
636 bp
Sequences
Splice sites
3' ss Seq
AGCATTTGTTATCATTTCAGGAC
3' ss Score
7.62
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTCAGGCGCTGGCGGCGGCGGCGGCGGCCACGCTCCCTCTTCCCCGGTCGGACCCGGCTCTGTCCCCCGCGCCCGAGCCCAGCTGAGCTCCCAGCCCTCCCGTCGCAGCCCCGATCTGGGGCGCGGCCGCCACCGGCACCATGCGCCCGGCAGCCCTGCTGCTCCTGCCCTCGCTGCTGGCGCTCCTGGTTCACG
Seq A exon
GACTCTCCTTGGAGGCCCCCACGGAAGGGGAAGGGCAGGCCCCAGGCCTGGAAGAGATGGATGGAGAGTTGACAGCGGCCCCTACACCTGAGCAGCCAGAACCAGGCGTCCACTTCGTCACAACGGCCCCTACCCTGAAGCTGCTTAACCACCACCCCCTGCTGGAGGAATTCCTACAAGAGGGGCAGGAGAAGGACGAGCTGAGGCCTGACCCACCTACAGCGAGTCCCCTGCCCCGCCTGGCCAACCAGGACAGCCGCCCCGTCTTCACCAGCCCCACTCCAGTCATGGTGGCAGCACCTACTCAACCCCAGTCCAGGGAAGGACCCTGGAGCCTGGAGTCAGAACCCCCTGCACTTCGTATCACAGTTGCCCTACCTCCGGGGCCCGGCATGGCAGTGCCCACCCCAGGCCCAGGGGAGAGGCCCAATACCCCACCCCCTAGTGGAGCATGGACTCCAACCCCAGAGGGTCCTGGAGACATAGGCAGGCCCTGGGCTCCAGGGGTCATGTCCCAGACCACAGGGCTCGGGATGGAGGGGACCGTCGCCACCTCCACGGCTTCAGGGGACGATGAGGAGACCACCAGCACCAGTACCATCATTACCACCGCCGTCACCACAGTCCAGCCACCAG
Seq C2 exon
GCCCTTGCAGCTGGAATTTCTCAGGCCCAGAGGGCTCTCTGGACTCCCCCACAGCCTCCAACTCACCCCCTGATGTCGGCCTGGACTGTTTCTACTACATCTCTGTCTACCCTGGCTACGGTGTGGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-'2-1,'2-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.972 C2=0.489
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCACGCTCCCTCTTC
R:
GATTTCCACACCGTAGCCAGG
Band lengths:
302-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]