DreEX0065578 @ danRer10
Exon Skipping
Gene
ENSDARG00000100876 | sez6a
Description
seizure related 6 homolog a [Source:ZFIN;Acc:ZDB-GENE-030131-8208]
Coordinates
chr10:36932374-36983836:-
Coord C1 exon
chr10:36983374-36983836
Coord A exon
chr10:36934557-36935153
Coord C2 exon
chr10:36932374-36932501
Length
597 bp
Sequences
Splice sites
3' ss Seq
TTGATATCTTTTGACTGCAGAGA
3' ss Score
6.54
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TTGTCCCTCCCCCCAACCATTCAAATGTCTCAATCCCTCAAGGTTTAGTGTGTATTAGAACTTGTTCTGGTTGCATTATAGCGCGATCTATCCATCCTCGTGTTATATCTAACTCTCCTTTGCCTCTCGGTACACAAAACCAAAAATCCTCTGAAGTCTAAACACTGTCTGCTGCTGTCCGGAGTGTCTGACGGAACTGTCCGCGGTGCTGAAGCTCCGCAATCCGCTTACAGCAGCCGTGAGTCGGGATAGCTGTTTCTCTGCGCTGAGAGTCGTTTTTCAGACCTCACGGAAATCTCATCTGACATCCAGTTCCTTTACTTGGGATATTTTAAACACAAGGACAAATTACAGTGTGTTGTTAGGAGTCGTTTCAGTATGTGCGTGAGGATCGAGCTCCAAACGGACCGGCTCTTTCTGCTGCTCGTACTGAGTCTTTCAGTGATTTACACGAGCTGTCAAG
Seq A exon
AGAATGGAACTGTAATAACCTGGAGAGGAGGAGAATCAGAATTGGAGAGAGAGTATGACCATTTCACCAGCAAACAAGAGCCACCAACTGACGTCCAGCAGCTTACGACAGATGCAGTACCAGTCCTCCCTAACCTAAGATTGCTCAAACTCCACTCAGCTCTGCTGACCAAGAACTTTGAGGGAGATCAGCATTTCTTTAAAGAGGTACCCCACACCATACCCACAGTCTCTACCTCCATATCCAACACTGAACATTCATATCTGGTGCCTCAGGAGGATGCAGCAGCTTTCTCTGACCTTGCAACTACAATGACAATGACTGTGACAACGCCTGTGGAACAGAGACAGTCCAGCAAAAGCCATAGTAGAGCATCGGAGAAGATGCTAATTACCTCTCAACCTCTCACAAACCCCACCGCTCCAACTAACACTCCCACAAGAACCAGTCAAAAGACAACTCTCACCACAATGACAAGGAAGGCCTTCAGCAAAGAAACTACATTGCCACCATTGTTTCTGTCAACATCACCTAAGAAAGAACAACGAAGGCCAGAAGAGAAAACCACACCCGGATACTTGTCTGAGATAACTCCAG
Seq C2 exon
CTCAGTGCGATATGAACTTCACAGACGCTGAGGGTTATATTGAGCTCCCTCCGGATGCCTCATTTGATTCCCACATGCATTGCACCTGCCTGGTTACTGTGTATCTGGGTTATGGCATTGAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100876_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.645 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043115=CUB=PU(39.6=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTCTGACGGAACTGTCC
R:
TGGGAATCAAATGAGGCATCCG
Band lengths:
355-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]