GgaEX7009968 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5916262-5923338:-
Coord C1 exon
chr19:5923317-5923338
Coord A exon
chr19:5916466-5917014
Coord C2 exon
chr19:5916262-5916395
Length
549 bp
Sequences
Splice sites
3' ss Seq
CCAACTCTCTCCCTTCCCAGGCT
3' ss Score
9.55
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGCTCCGCGCCCCCGCGCACG
Seq A exon
GCTTCAATGGGCTGGAGAGGAAGACTGGTGAGAGCGCCGAGGCCGAAGGGGACCCCACAGCGCTCCCCACGCCGGCTGAGCGCGAAGCCGAGGCGCGCTTCGTCAGCACAGCACCCACCCTGAAGCTGCTCAACCACCACCCGCTGCTGGAGGACCTGCTGCACGAGGCCTTCCTGAAGAAGGACTACCTGGCCCAGGCGCCCTTCCCACCCGGCCTGCCCGGCCCCGTGCTGCCTGATGAGGCCCTGAGGCCGGACCCTGGACCCCCAGCCCAACACATCCCACCGCGTGCCCCCGCTTTGCCCAGGGTTGCCTTCCCCACCGCCCCACTGACCACACCTGCTGGGCGCTCGGGGCCATGGGGGGAGCCCTGGGGGGTCGCGCCGGGCACTGACCCCTCACAGCCCCCTACTGGGGGGTCAGGATCGAGCCCCGCAGCCCCCAGCCAGGCGCCCATCTTAGGGACCACTGGAGTCTCCGGGGATGAGGAGGGGACCACCACTACCTCCACCATCACCACCACCACCGTCACCACGCTGCAGGGACCAG
Seq C2 exon
CACCATGCAACCGGACGCTGGCAGGTCCCGAGGGCTGGCTGGTGTCCCCAGAGCCAGCCAGTGCCCCATATGACAGCAGCATGGACTGCACCTACACCATCTCCGTCTACCCTGGCTATGGTGTAGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.901 C2=0.467
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0043115=CUB=PU(39.6=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]