RnoEX6048631 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64882606-64892569:-
Coord C1 exon
chr10:64891907-64892569
Coord A exon
chr10:64891178-64891311
Coord C2 exon
chr10:64882606-64882801
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTCCTGACTCCCAGGCC
3' ss Score
8.28
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGGAATTTCTTCAAGAGGGGCTAGAAGGGAGAGAGGAAGCTCCGAGGCCGGCACTGCCCTTCCAGCCAGACTCACCTACACCCTTTACTCCAAGCCCCCTTCCCCGCCTCACCAACCAGGACAACCGCCCTGTCTTTACCAGTCCGACGCCAGCTGTAGCTGCGGCACCCACGCAGCCCCACTCCAGAAAGAAACCCTGGAACCCAGAGTCAGAGCCCCCGGAGCTTTACATCACATCTCCCCTCCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCACCCAGAGGACAGACCCAGCACTACACCCCCCAGCCAAGCATGGACTCCAACCCAGGAGGGTCCTGGAGACATGGGCAGACCTTGGGTTCCAGAGATCATGTCTAAGACCACAGGGCTTGGTATCGAGGGGACCATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACCACCACCACCATCATTACCACCGTCACCACAATTCAGCCACCAG
Seq A exon
GCCCCTGTAGCTGGAATTTCTCAGGCCCGGAGGGCTCTCTGGATTCCCCTGCGGTCCCCAGCGTCCCCTCTGATGTTGGCCTGGACTGTCTCTACTACATCTCTGTCTACCCTGGATATGGAGTCGAGATCAAG
Seq C2 exon
GTGAAGAACATCAGCCTTCAGGAAGGAGAGACCATAACCGTGGAGGGCCTGGGGGGGCCTGACCCACTGCCCTTGGCTAACCAGTCTTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCCACCAGGCAGCCGTGAGGTTCCAAAGCCTTCCACTTCCCGCTGGACCTGGTACTTTCCATTTCCACTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'6-5,'6-2,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.444 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGGATGACGAAGAGACC
R:
TGGAAAGTACCAGGTCCAGCG
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]