GgaEX1052038 @ galGal3
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7343271-7346516:+
Coord C1 exon
chr15:7343271-7343484
Coord A exon
chr15:7343747-7343880
Coord C2 exon
chr15:7346324-7346516
Length
134 bp
Sequences
Splice sites
3' ss Seq
CACTGATGTGCATCCCCCAGTGC
3' ss Score
5.16
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATCTCCCCTTTCACCCCAGTGCCATCAACTGCTCAGCCCTTCCCTGGTGGCCCTGGTGACGTGGGCACGGGTCCCACAGCAGCTCCCAGTGGTGCCATTAACCAGATGGACAGCGCTGAAAGTGAGATGAACGGCTCTGCCTCGGAGGAGAGCCAAGAAACCACCACCTCCACCATCATCACCACCACTGTCATCACCACGGAGCCCACCCCGG
Seq A exon
TGCGCTGCAGTGTGAGCTTCTACGACCCCGAGGGCTACATTGACTCCACGGATTACCCCCCGCTGCCCCGGCACAGCTTCTTGGAGTGCACCTACAACGTCACTGTTTACACGGGCTATGGCGTGGAGCTGCAG
Seq C2 exon
GTGAAGAGCGTCAACCTGTCAGACGGGGAGGTGCTTTCCATCCGTGGCGTGGATGACGACACGCTGGTGGTGCTGGCCAACCAGACACTGCTGGTGGAAGGCCAGGTCATCCGCAGCCCCACCAACACCATCTCCGTCTACTTCCGTACCTTCCAGGACGAGGCGGTGGGGACCTTCCAGCTGCACTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(39.6=93.3)
C2:
PF0043115=CUB=PD(58.5=95.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAGATGAACGGCTCTGC
R:
TCGTCCTGGAAGGTACGGAAG
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]