BtaEX6073577 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68249647-68253731:+
Coord C1 exon
chr17:68249647-68250414
Coord A exon
chr17:68251170-68251303
Coord C2 exon
chr17:68253539-68253731
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGACAGTGCCTTTCCTCCAGCTC
3' ss Score
6.92
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GCCTTCGCTCAAGCAGGTGAACTCGGCCAGGAAGCAGCTGAGGCCGAAGGCCACGCCCGCAGCGGCCACGCAAAGGACCGCGTCCCAGCCGGCATCCCCGGGCCCAGTTCTGTCCATCGCCCCGGGGAAGCCCCGCCCACCCGGTGACCAGGACCCCATGGCCTCCGCAGGGGAGGAGACCCGCCCGCTGTCTCTGTCCTCCGAGGAGCCCCTCTGGCTGGAGCGGAAGGAAGGCGCGGTCCCCACGACCCCCGCGCCCCTGCAGATCGCCCCCTTCACCTCGCAGCCGCTGGTGGCCCACACGCTCCCCCGGAGCCCCGACCCCGGGGCGCCGGCCGTGCCCGAGGAGGCCCCGGAGGCTCCCCCCGAGGATGCAAGCCCCGTGACGGTGATGGACAAAGGGGAGACTGAGCTGACCGGGTCAGCCTCAGAGGAGAGCCAGGAGACCACCACGTCCACCATCATCACCACCACAGTCATCACCACCGAGCAGGCCCCAG
Seq A exon
CTCTCTGCAGTGTGAGCTTCTCTGACCCTGAAGGGTACATCGACTCCAGTGATTACCCGCCGTTGCCCCTCAACAACTTCCTGGAGTGCACGTACAATGCGACGGTCTACACTGGCTATGGGGTGGAGCTCCAG
Seq C2 exon
GTGAAGAGCGTGAACCTGTCCGAGGGGGAGCTGCTTTCCATCCGAGGGGTGGACGGCCCCTCTCTGACCGTCCTGGCCAACCACACGCTCCTGGTCGAGGGCCAGGTCATCCGCAGCCCCACCAACACCATCTCCGTGTACTTCCGCACCTTCCAGGACGACGGCCTCGGGACCTTCCAGCTGCACTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(39.6=93.3)
C2:
PF0043115=CUB=PD(58.5=95.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGGGGAGACTGAGCTGA
R:
GTGCGGAAGTACACGGAGATG
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]