RnoEX6065080 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50189528-50192162:+
Coord C1 exon
chr12:50189528-50190085
Coord A exon
chr12:50191315-50191448
Coord C2 exon
chr12:50191970-50192162
Length
134 bp
Sequences
Splice sites
3' ss Seq
CAACGTTTGTTTCATTGTAGCTC
3' ss Score
7.66
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCTGGAGGGCAGCCTGGAAGAGGGGGTGACATCAGCAGCCCCAGGTCCCCTGCCATCCCGGGAAGCACTGGAAGCACTAGAAGGGTCCTTGCCCCCTCTGTTCCCCGATGAGGCCAGAGTCCAGCATACCCCATCCCTAAGGAAGGCTCTGCCGTCCCTGAAGCAACTCAACTCAGCCCGGAGGCAGTTGAGGCCCCTGGCTACCCCGACAACTCTGCAGAGACTGGGATCCCCTTCCTCGGCTACCACGAAGCCACGTGAGCCTGGAGACCCGGAGCAGCCTACAGCGCCTGCGCCACTGCAGATCGCACCCTTCACCGCTCTGGCTACTACACTTCCACACAGCCCGCAGCCCGCGCAGGCCCCCGATGACAGCAGCCTCAGTAGCCCGCTGGACAAGGGTGACAATGAGCTGACCGGGTCTGCCTCTGAGGAGAGCCAGGAGACCACCACGTCCACCATCGTCACCACCACCATCATCACCACGGAGCAGGCCCCAG
Seq A exon
CTCTCTGCGGTGTGAGCTTCTCGGACCCCGAGGGATACATTGACTCAAGTGATTTCCCTCCTCAGCCCTCCAGCAGCTTCCTGGAATGCACCTACAATGTGACTGTCTACACTGGCTACGGGGTTGAACTGCAG
Seq C2 exon
GTGAAGAGTGTCAACCTATCTGAGGGGGAGCTGCTCTCCATCCGAGGAGTGGACGGCCCCACCCTGACAGTCCTGGCCAACCAGACTCTCCTGGTGGAGGGCCAGGTGATCCGAAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCTTCCAGGATGACAACCTTGGGACCTTCCAGCTACATTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.178 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(39.6=93.3)
C2:
PF0043115=CUB=PD(58.5=95.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGGAGAGCCAGGAGAC
R:
AGGTCCCAAGGTTGTCATCCT
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]