GgaEX1052034 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5915475-5917014:-
Coord C1 exon
chr19:5916466-5917014
Coord A exon
chr19:5916262-5916395
Coord C2 exon
chr19:5915475-5915667
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGGGTCTCCTTGTCACCCAGCAC
3' ss Score
3
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGACCCCACAGCGCTCCCCACGCCGGCTGAGCGCGAAGCCGAGGCGCGCTTCGTCAGCACAGCACCCACCCTGAAGCTGCTCAACCACCACCCGCTGCTGGAGGACCTGCTGCACGAGGCCTTCCTGAAGAAGGACTACCTGGCCCAGGCGCCCTTCCCACCCGGCCTGCCCGGCCCCGTGCTGCCTGATGAGGCCCTGAGGCCGGACCCTGGACCCCCAGCCCAACACATCCCACCGCGTGCCCCCGCTTTGCCCAGGGTTGCCTTCCCCACCGCCCCACTGACCACACCTGCTGGGCGCTCGGGGCCATGGGGGGAGCCCTGGGGGGTCGCGCCGGGCACTGACCCCTCACAGCCCCCTACTGGGGGGTCAGGATCGAGCCCCGCAGCCCCCAGCCAGGCGCCCATCTTAGGGACCACTGGAGTCTCCGGGGATGAGGAGGGGACCACCACTACCTCCACCATCACCACCACCACCGTCACCACGCTGCAGGGACCAG
Seq A exon
CACCATGCAACCGGACGCTGGCAGGTCCCGAGGGCTGGCTGGTGTCCCCAGAGCCAGCCAGTGCCCCATATGACAGCAGCATGGACTGCACCTACACCATCTCCGTCTACCCTGGCTATGGTGTAGAGATCAAG
Seq C2 exon
GTGCAGAACATCAGCCTGGCAGATGGGGAGACGCTGACGGTGGAGAGCGCGGGGGGCCTGGAGCCAGCGGTGTTGGCCAACGAGTCCTTCCTGCTGCGGGGCCAGGTCATCCGCAGCCCTGCCAACGTGCTCACCCTGCGCTTCCAGAGCCCCCGATCCACCAGCCCTGGCTCCTACCGCTTTCAGTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.901 A=0.467 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(39.6=93.3)
C2:
PF0043115=CUB=PD(58.5=95.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACTACCTCCACCATCA
R:
TACTGAAAGCGGTAGGAGCCA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]