DreEX0065588 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24453518-24504205:+
Coord C1 exon
chr15:24453518-24454222
Coord A exon
chr15:24456479-24456612
Coord C2 exon
chr15:24504016-24504205
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCTATCTTTTGTAATGCAGCTC
3' ss Score
6.77
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTATTTTCAGGACAGTGGAGGGGCAGCGCACCATCCCACAATGCCATCCTCCAGTTCCCATCTCCTCCAGGACCCATCTACACAGTTGGTCCCACATGAAGAAGCACTGCCTTTTTCTGATGTAGCGGCTCCCAGAAGCACCACAATGGCTCCATCGGCTGCTGCCCTCACCCAGCCACATGTGCCCAAAATCCAACACAAACTTTCAGTAGAAACGCAGAGAAGAAGTTCAGATCCATCCATTTCTTTGAGCACCACTGATGCGCACACATCTGCACTGCCTGTTTCCAAACACTTAGATAGAGAAGACTTCACTCAAACTTTCAACATCAAGCCACAGGATGTGACTGTAGAGAGAAAGCCCTCTGTTGAACATGATGAATCTCCAGAAAGTGATGTTGATGTAAAAGCATCGTCATCAGTGGCTGGTGATTTGGATGACGAGACCACCACATCCACCATCATCACCACAACGGTCATTACCAACATGCAGACGCCAG
Seq A exon
CTCCGTGTAGCGCCAATTTCACATCGCCGGGAGGCTACATAGAGACACCACAGCAGGCTAGGAGCTGGTACAATGCCAATGTGGACTGCACATACACCGTGACCGTCTACATGGGCTATGGGGTGGAAATCCAG
Seq C2 exon
GTAATGAATGTGAGCCTGTCTGAGGGTGACGTAGTCATATTCGAAGACCTGGGTAACCGAGAACCTTCTGTCCTGGCCAACGAGTCCATCCTACTGAAAGGTCTGGTGGTGCGCAGCTGGAGCAACCAAATCTCCATCCACTTTCGCAGCCGCCAACCGCAGTCCAGCTCCTTACTCCTGCGCTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(40.0=93.3)
C2:
PF0043115=CUB=PD(58.1=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCATCGTCATCAGTGGCTG
R:
GCTGCGAAAGTGGATGGAGAT
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]